Journal Articles
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- SA Niederer, Y Aboelkassem, C Cantwell, ..., RW dos Santos and L. Wang (2020), Creation and Application of Virtual Patient Cohorts of Heart Models.
Phil Trans Roy Soc A. Vol. 378 pp. 20190558 - RH Clayton, Y Aboelkassem, CD Cantwell, ... C Roney, and RW dos Santos (2020), An Audit of Uncertainty in Multi-Scale Cardiac Electrophysiology Models. Phil Trans Roy Soc A. Vol. 378 pp. 20190335
- D Tripathi, VK Narla, Y Aboelkassem (2020), Electrokinetic membrane pumping flow model in a microchannel. Phys. Fluids. Vol. 32 pp. 082004
- S Cao, Y Aboelkassem, A Wang, JS Saucerman, JH Omens, McCulloch AD (2020), Quantification and Data Uncertainty in a Network Model of Cardiac Myocyte Mechanosignaling. Phil Trans Roy Soc A. Vol. 378 pp.20190336
- CL Lei, S Ghosh, D Whittaker, Aboelkassem Y, ....,GR. Mirams and R Wilkinson, (2020), Considering Discrepancy when Calibrating a Mechanistic
Electrophysiology Model. Phil. Trans. R. Soc. A 378: 20190349. - A. Wang, S Cao, Y Aboelkassem, Valdez-Jasso D (2020), Uncertainty Quantification of A New Network Model of Pulmonary
Arterial Adventitial Fibroblast Pro-Fibrotic Signalling. Phil Trans Roy Soc A. Vol. 378 pp. 20190338 - Y. Aboelkassem, J. Powers, K. McCabe, and AD. McCulloch (2019), Multiscale Models of Cardiac Muscle Biophysics and Tissue Remodeling in
Hypertrophic Cardiomyopathies. Curr Op BME, Vol. 11, pp. 35-44. - Y. Aboelkassem, K. McCabe, G. Huber, M. Regnier, JA. McCammon and AD. McCulloch (2019), A Stochastic Multiscale Model of Cardiac Thin Filament Activation using Brownian-Langevin Dynamics. Biophysical J., Vol. 117 (12), pp. 2255-2272
- Aboelkassem, Y. (2019), Pumping Flow Model in a Microchannel with Propagative Rhythmic Membrane Contraction. Phys. Fluids, Vol. 31 (5), pp. 051902
- Aboelkassem, Y. , and Z. Virag (2019), A Hybrid Windkessel-Womersley Model for Blood Flow in Arteries. J. of Theoretical Biology, Vol. 462 (7), pp. 499-513.
- Tan M. P., K. S. Buchholz, S. Cao, Y. Aboelkassem, J. H. Omens, A. D. McCulloch, J. J. Saucerman (2019), Systems Modeling of Cardiomyocyte Mechanobiology. Molecular & Cellular Biomechanics, Vol. 16, pp. 13-14.
- Aboelkassem, Y. and N. Trayanova (2018), Tropomyosin Dynamics During Cardiac Thin Filament Activation as Governed by a Multi-Well Energy Landscape. Prog Biophys Mol Biol, In Press: https://doi.org/10.1016/j.pbiomolbio.2018.07.015
- Aboelkassem, Y. (2017), Stokes Flow Patterns Induced by a Single Cardiac Cell. Compu Biol Med., Vol. 86, pp.35-74.
- Aboelkassem, Y., and S. G. Campbell (2016), Acute Optogenetic Modulation of Cardiac Twitch Dynamics Explored Through Modeling. J. of Biomechanical Engineering, ( Accepted available Online DOI: 10.1115/1.4034655)
- Aboelkassem, Y., J. A. Bonilla, K. McCabe, and S. G. Campbell (2016), Contributions of Ca++ Independent Thin Filament Activation to Cardiac Muscle Function. Biophysical J., Vol. 109 (10), pp. 2101-2112.
- Aboelkassem, Y. (2016), Chaotic mixing by oscillating a Stokeslet in a circular Hele-Shaw microfluidic device. Nanoscale Syst.: Math. Model. Theory Appl, Vol. 5, pp. 1-8.
- Aboelkassem, Y., D. Savic and S. G. Campbell (2015), Mathematical Modeling of the Aortic Valve Dynamics during Systole. J. of Theoretical Biology, Vol. 365, pp. 280-288.
- Aboelkassem, Y., D. Savic, and S. G. Campbell (2015), Modeling Predicts A Connection Between Sinus Vortex Eeffects and Aortic Compliance. J. of Theoretical Biology, Vol.389, pp. 306-309.
- Aboelkassem, Y. (2015) (Invited Article), Insect-Inspired Micropump: Flow in a Tube with Local Contractions. Micromachines, Vol. 8, pp. 1143-1156.
- Aboelkassem, Y. (2015), A Ghost-Valve Micropumping Paradigm for Biomedical Applications. Biomed. Eng. Lett., Vol. 5, pp. 45-50.
- Aboelkassem, Y., and A. E. Staples (2014), A three-dimensional model for flow pumping in a microchannel inspired by insect respiration. Acta Mechanica, Vol. 225 (2), pp. 493-507.
- Aboelkassem, Y., and A. E. Staples (2013), Selective Pumping in a Network: Insect-Style Microscale Flow Transport. Bioinspiration \& Biomimetics, Vol. 8, pp. 026004.
- Aboelkassem,Y., A. E. Staples (2013), A Bioinspired Pumping Model for Flow in a Microtube with Rhythmic Wall Contractions'', J. of Fluids and Structures, Vol. 42, pp. 187-204.
- Aboelkassem, Y., and A. E. Staples (2013), Stokeslets-Meshfree Computations and Theory for Flow in a Collapsible Microchannel. Theoretical \& Computational Fluid Dynamics, Vol. 27, pp. 681-700.
- Aboelkassem, Y., and A. E. Staples (2012), Flow Transport in a Microchannel Induced by Moving Wall Contractions: A Novel Micropump Mechanism. Acta Mechanica, Vol. 223 (3), pp. 463-480.
- Aboelkassem, Y., AH Nayfeh and M. Ghommem, (2010), Bio-Mass Sensor using an Electrostatically Actuated Microcantilever in a Vacuum Microchannel. J. of Microsystems Technologies, Vol. 39 (2), pp. 183-192.
- Aboelkassem, Y. (2011), Numerical Simulations of Electroosmotic Complex Flow Patterns in a Microchannel. Computers and Fluids, Vol. 52, pp. 104-115.
- Aboelkassem, Y. (2010), Electroosmotic flow in a microchannel for microfluidic applications. European J. of Scientific Research, Vol. 39(2), pp. 183-192.
- Aboelkassem, Y. (2009), Dissipations of Intense Vortices. Canadian Journal of Physics, Vol. 87 (6), pp. 685-689.
- Aboelkassem, Y. (2009), Blade Vortex Interactions: Experimental Measurements of the Near- Flow Field. J. of Fluid Science and Technology, Vol. 4(1), pp. 138-155.
- Aboelkassem, Y. (2007) , Trailing Vortex Filament: A Novel Similarity Analysis. J. of Aircraft, Vol. 44(2), pp. 683-687.
- Aboelkassem, Y., and G. H. Vatistas (2007), New Model for Compressible Vortices. J. of Fluids Engineering, Vol. 129, pp. 1073-1079.
- Aboelkassem, Y., and G. H. Vatistas (2007), On the Refracted Patterns Produced by Liquid Vortices. Acta Mechanica Sinica, Vol. 23, pp. 11-15.
- Lee, T., and Aboelkassem, Y. (2006), Interaction of a Streamwise Vortex with a Blade Tip Vortex. J. of Aircraft, Vol.43(6), pp. 1956-1958.
- Vatistas, H. G., and Aboelkassem, Y. (2006), Space-Time Analogy of Self-Similar Intense Vortices. AIAA , Vol. 44(4), pp. 912-917.
- Vatistas, G.H., and Aboelkassem, Y.(2006), Extension of the Incompressible n=2 Vortex into Compressible. AIAA, Vol. 48(8), pp. 1912-1915.
- Jawarneh, A., Vatistas, G.H., and Aboelkassem, Y. (2005), Experimental Investigations of the Pressure drop in a Sink-Swirl Flow within Two Disks. J. of Propulsion and Power, Vol. 21(4), pp. 759-760.
- Aboelkassem, Y., G. H. Vatistas , and N. Esmail (2005), Viscous Dissipation of Rankine Vortex Profile in Zero Meridional Flow. Acta Mechanica Sinica, Vol. 21(6), pp. 550-560.
- Vatistas, H. G., Aboelkassem, Y. and Siddiqui, K. (2005), Time Decay of n- Family of Vortices. AIAA, Vol. 43(6), pp. 1389-1391.
Conference and Proceedings
- Aboelkassem, Y., and Z. Virag “A Hybrid Windkessel Model of Blood Flow in Arterial Tree Using Velocity Profile Method” The 69th Annual Meeting of the APS Division of Fluid Dynamics, Portland, Oregon, November 20-22, USA, 2016
- Aboelkassem, Y. and N. Trayanova ``Tropomyosin Dynamics During Cardiac Thin Filament Activation as Governed by a Multi-Well Energy Landscape" Biophysical J., Vol. 110, Issue 3, p524a, 2016
- Aboelkassem, Y., K. McCabe, and S. G. Campbell ``The Accuracy of Cardiac Myofilament Simulations is Enhanced by Permitting Calcium-Independent Tropomyosin Transitions" Biophysical J., 106 (2), 350a, 2015
- Aboelkassem, Y., and S. G. Campbell ``Optogenetics Manipulation of Ca++ Transients and Contraction in a Mathematical Model of Cardiomyocyte function" Biophysical J. 108 (2), 268a, 2015.
- Aboelkassem, Y., and S. G. Campbell ``Modulation of Cardiac Twitch Dynamics by the Tropnin-I Inhibitory Region" Biophysical J., 108 (2), 201a, 2014.
- Aboelkassem, Y., K. McCabe, and S. G. Campbell "The Accuracy of Cardiac Myofilament is Enhanced by Permitting Calcium-Independent Tropomyosin Transitions" 58th Annual meeting, Biophysical Society, San Francisco, CA, Feb. 15-19, 2014.
- Aboelkassem, Y., K. McCabe, and S. G. Campbell "Biophysical Properties of Cardiac Myofilaments Define Their Multi-Functional Role in Whole-Heart Physiology" Cardiac Physiome Workshop, Bar Harbor, ME,October 17-19, 2013
- Aboelkassem, Y., K. McCabe, and S. G. Campbell "Biophysical Properties of Cardiac Myofilaments Define Their Multi-Functional Role in Whole-Heart Physiology" Cardiac Physiome Workshop, Bar Harbor, ME,October 17-19, 2013
- Aboelkassem, Y., and Anne E. Staples “A bioinspired pumping model for flow in a microtube with rhythmic wall contractions” The 66th Annual Meeting of the APS Division of Fluid dynamics, Pittsburgh, Pennsylvania, November 24-26, USA ,2013
- Aboelkassem, Y., and Anne E. Staples “Selective pumping in a network: A novel bioinspired flow transport paradigm ” The 65th Annual Meeting of the APS Division of Fluid dynamics, San Diego, California, November 18-20, USA ,2012
- Aboelkassem, Y., and Anne E. Staples “Meshfree Computations for Flow Pumping in a Microchannel Inspired by Insect Physiological Systems ” The 64th Annual Meeting of the APS Division of Fluid dynamics, Baltimore, Maryland, November 21-22, USA ,2011
- Aboelkassem, Y., and Anne E. Staples “A biomimetic model for internal fluid transport based on physiological systems in insects” The 78th Annual Meeting of the Southeastern Section of the American Physical Society(SESAPS), Roanoke, Virginia, October 19-22, USA, 2011
- Aboelkassem, Y., and Anne E. Staples, and Joho J. Socha ``Microscale Flow Pumping Inspired by Rhythmic Tracheal Compressions in Insects'', Proceedings of the ASME 2011 Pressure Vessels and Piping Conference (PVP2011), Baltimore, Maryland, July 17-21, USA, 2011, Paper Number: PVP2011-57061.
- Aboelkassem, Y., and Anne E. Staples “Flow Transport in a Microtube Inspired by Respiratory System in Insects” The 63rd Annual Meeting of the APS Division of Fluid Dynamics, Long Beach, California, November 21-23, USA, 2010
- Aboelkassem, Y., and Anne E. Staples “On the Flow Patterns Induced by Rhythmic Compressions of an Insect Tracheal Tube ” The 2010 Joint DCB/DVM Southeast Regional SICB Meeting, Virginia Tech, VA, November 6, USA, 2010
- Aboelkassem, Y., and Anne E. Staples “Controlling Transition in Taylor-Couette Flow with Spatial Forcing” The 62nd Annual Meeting of the APS Division of Fluid Dynamics, Minneapolis, Minnesota, November 22-24, USA, 2009
- Aboelkassem, Y., and Anne E. Staples “Taylor-Couette flow with a modified inner cylinder” The 16th International Couette-Taylor Flow Workshop, Princeton University, NJ, USA, September, 2009
- Aboelkassem, Y., and Anne E. Staples “Linear Stability Analysis of Modified Taylor-Couette Flow” The 2009 Joint ASCE-ASME-SES Conference on Mechanics and Materials, Virginia Tech, VA, USA, June, 2009
- Aboelkassem, Y., and Anne E. Staples “Controlling Transitions in Taylor-Couette Flow” 25th Annual GSA Research Symposium, Virginia Tech, VA, USA, March, 2009
- Aboelkassem, Y., and Shereef .A. Sadek, “ Modeling of Two-Celled Vortices” The Mechanics Conference to Celebrate the 100th Anniversary of the Department of Engineering Science and Mechanics, Virginia Tech, VA, USA, May 29-30, 2008
- G. Vatistas, Aboelkassem, Y., and K. Siddiqui, ``On the Space-Time Duality of Intense Vortices'', AIAA-2005-5159, 35th AIAA Fluid Dynamics Conference and Exhibit, Toronto, Ontario, June 6-9, 2005
- A. Jawarneh, G. Vatistas, and Aboelkassem, Y., ``Effect of Vortex Generators in Confined Swirling Flow'', AIAA-2005-4651, 35th AIAA Fluid Dynamics Conference and Exhibit, Toronto, Ontario, June 6-9, 2005
- Aboelkassem Y., and Vatistas G.H., ``Dissipation of Intense Disk-like Eye Vortices'', 20th Canadian Congress of Applied Mechanics (CANCAM), May 30th to June 2nd Montreal, Quebec, Canada, 2005, Paper No. 4
- Aboelkassem Y., and Vatistas G.H., “The Decay of Newman’s Trailing Vortex, through a New similarity Variable” The 11th Aerodynamics Symposium, Canadian Aeronautics and Space Institute (CASI), Toronto, Ontario, Canada, April 26-27, 2005
- Aboelkassem Y., Vatistas G.H. and Ali Jawarneh “Viscous Dissipation Model for Monopolar-Like Vortices” Euromech Colloquium 448, Vortex dynamic and field interactions, Paris, France , September 3-6, 2004
- Vatistas G.H., Aboelkassem, Y. and M.H. Kamran Siddiqui “On the Properties of a Class of Algebraic Vortex Solutions” Euromech Colloquium 448, Vortex dynamic and field interactions, Paris, France, September 3-6, 2004
- Aboelkassem Y. and Gamal A. Moty “Induced Pressure of Helicopter Main Rotor-Fuselage Interaction using Artificial Neural Network” Proceedings of the 31st International Conference on Computers and Industrial Engineering., Los Angeles, USA, February, 2003